Integration of enrichment analyses and volcano plots further confirmed metabolic reprogramming, with upregulation of OXPHOS (Hallmark OXPHOS), fatty acid metabolism (GOBP Fatty Acid Metabolic Process), and mitochondrial proteins (MitoCarta 3.0)
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When reporting protein numbers and quantities, the Protein.Group column in DIA-NNs report was used to identify the protein group and PG.MaxLFQ column was used to obtain the normalized quantity
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